/EXTERNAL CREST/K006447_1_lane_gembs

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SAMPLE K006447_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2046385224 100.00 % 1023192612 100.00 % 1023192612 100.00 %
General Reads 1914029419 93.53 % 988615299 96.62 % 925414120 90.44 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13457482 0.66 % 6622125 0.65 % 6835357 0.67 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 118898323 5.81 % 27955188 2.73 % 90943135 8.89 %
Bisulfite_reads C2T 979481219 47.86 % 506042022 49.46 % 473439197 46.27 %
Bisulfite_reads G2A 948005682 46.33 % 489195402 47.81 % 458810280 44.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 426390110
Average Unique 41.67 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 75744530035 36.29 % 47284130337 45.31 % 28460399698 27.27 %
Base Counts Overall C 29745735528 14.25 % 24634939288 23.60 % 5110796240 4.90 %
Base Counts Overall G 29194569453 13.99 % 2669504614 2.56 % 26525064839 25.42 %
Base Counts Overall T 71913526478 34.45 % 28715095427 27.51 % 43198431051 41.39 %
Base Counts Overall N 2132931354 1.02 % 1061976758 1.02 % 1070954596 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9837171837928681
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 571538377



Mapping Quality

Mapping Quality Histogram
K006447_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006447_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
JKU009.Bisulfite-Seq.DNA_Methylation.JGAX00000011784.JKU009_WGBS