/EXTERNAL CREST/mapping_coverage/K006448_1_lane_gembs
BACK
SAMPLE K006448_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1567811000 |
100% |
147031895075 |
100% |
| Mapped |
1501433514 |
95.77 % |
140327768989 |
95.44 % |
| Passed |
601919733 |
38.39 % |
49476877108 |
33.65 % |
| NotPassed |
899513781 |
57.37 % |
90850891881 |
61.79 % |
| |
|
|
|
|
| LowMAPQ |
423287340 |
27.00 % |
42752021340 |
29.08 % |
| MateUnmapped |
66377486 |
4.23 % |
6704126086 |
4.56 % |
| Duplicate |
82905659 |
5.29 % |
8373471559 |
5.70 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
258796 |
0.02 % |
26138396 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
393061986 |
25.07 % |
39699260586 |
27.00 % |
| Unmapped |
66377486 |
4.23 % |
6704126086 |
4.56 % |
Base Level Counts
| Bases |
# |
% |
| Total |
60734481399 |
100% |
| Passed |
46296872710 |
76.23 % |
| Trimmed |
2445304038 |
4.03 % |
| Clipped |
1535437369 |
2.53 % |
| Overlapping |
9722166922 |
16.01 % |
| LowQuality |
734700360 |
1.21 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |