{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 106744706, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 104561990, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.96, 
            "paired": 106744706, 
            "paired_qc_failed": 0, 
            "read1": 53372353, 
            "read1_qc_failed": 0, 
            "read2": 53372353, 
            "read2_qc_failed": 0, 
            "paired_properly": 103241311, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.72, 
            "with_itself": 104123529, 
            "with_itself_qc_failed": 0, 
            "singletons": 438461, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.41, 
            "diff_chroms": 592896, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 158940554, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 157152767, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.88, 
            "paired": 158940554, 
            "paired_qc_failed": 0, 
            "read1": 79470277, 
            "read1_qc_failed": 0, 
            "read2": 79470277, 
            "read2_qc_failed": 0, 
            "paired_properly": 154442853, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 97.17, 
            "with_itself": 156399332, 
            "with_itself_qc_failed": 0, 
            "singletons": 753435, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.47, 
            "diff_chroms": 1218211, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 46955112, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 9110428, 
            "paired_opt_dupes": 15652, 
            "dupes_pct": 0.194024
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 68222921, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 2746068, 
            "paired_opt_dupes": 28097, 
            "dupes_pct": 0.040251
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 46953463, 
            "distinct_read_pairs": 37843334, 
            "one_read_pair": 30210351, 
            "two_read_pair": 6360592, 
            "NRF": 0.805975, 
            "PBC1": 0.7983, 
            "PBC2": 4.749613
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 68139154, 
            "distinct_read_pairs": 65397649, 
            "one_read_pair": 62741963, 
            "two_read_pair": 2573454, 
            "NRF": 0.959766, 
            "PBC1": 0.959392, 
            "PBC2": 24.380449
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 75689368, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 75689368, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 75689368, 
            "paired_qc_failed": 0, 
            "read1": 37844684, 
            "read1_qc_failed": 0, 
            "read2": 37844684, 
            "read2_qc_failed": 0, 
            "paired_properly": 75689368, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 75689368, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 130953706, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 130953706, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 130953706, 
            "paired_qc_failed": 0, 
            "read1": 65476853, 
            "read1_qc_failed": 0, 
            "read2": 65476853, 
            "read2_qc_failed": 0, 
            "paired_properly": 130953706, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 130953706, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 36382, 
        "Np": 0, 
        "N_opt": 36382, 
        "N_consv": 36382, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 220, 
            "corr_est_frag_len": 0.350478208852961, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.3282596, 
            "argmin_corr": 1500, 
            "min_corr": 0.1723169, 
            "NSC": 2.033917, 
            "RSC": 1.142479
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.498165463245
        }, 
        "rep1-pr1": {
            "FRiP": 0.494861130394
        }, 
        "rep1-pr2": {
            "FRiP": 0.495043460752
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.491346575346
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.165640208879, 
            "auc": 0.495294091677, 
            "ch_div": 0.115220750971, 
            "elbow_pt": 0.0, 
            "jsd": 0.889017731652, 
            "syn_auc": 0.506309426602, 
            "syn_elbow_pt": 0.48179122179, 
            "syn_jsd": 0.532446177998
        }
    ]
}
