/EXTERNAL CREST/K006444_1_lane_gembs

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SAMPLE K006444_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1461431526 100.00 % 730715763 100.00 % 730715763 100.00 %
General Reads 1387526700 94.94 % 706339587 96.66 % 681187113 93.22 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7064883 0.48 % 3490223 0.48 % 3574660 0.49 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 66839943 4.57 % 20885953 2.86 % 45953990 6.29 %
Bisulfite_reads C2T 711105392 48.66 % 362228764 49.57 % 348876628 47.74 %
Bisulfite_reads G2A 683486191 46.77 % 347601046 47.57 % 335885145 45.97 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 309201139
Average Unique 42.31 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 54385713808 36.48 % 33832839772 45.39 % 20552874036 27.58 %
Base Counts Overall C 20048167281 13.45 % 17713574134 23.77 % 2334593147 3.13 %
Base Counts Overall G 20733901568 13.91 % 1536079617 2.06 % 19197821951 25.76 %
Base Counts Overall T 52402436786 35.15 % 20716971367 27.80 % 31685465419 42.51 %
Base Counts Overall N 1495796209 1.00 % 733542936 0.98 % 762253273 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9856406588015795
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 416768207



Mapping Quality

Mapping Quality Histogram
K006444_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006444_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
JKU006.Bisulfite-Seq.DNA_Methylation.JGAX00000011757.JKU006_WGBS