/EXTERNAL CREST/mapping_coverage/K006444_1_lane_gembs
BACK
SAMPLE K006444_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1327299253 |
100% |
124207288252 |
100% |
| Mapped |
1282070382 |
96.59 % |
119639172281 |
96.32 % |
| Passed |
500514986 |
37.71 % |
40702077285 |
32.77 % |
| NotPassed |
781555396 |
58.88 % |
78937094996 |
63.55 % |
| |
|
|
|
|
| LowMAPQ |
371566478 |
27.99 % |
37528214278 |
30.21 % |
| MateUnmapped |
45228871 |
3.41 % |
4568115971 |
3.68 % |
| Duplicate |
61107463 |
4.60 % |
6171853763 |
4.97 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
225352 |
0.02 % |
22760552 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
348656103 |
26.27 % |
35214266403 |
28.35 % |
| Unmapped |
45228871 |
3.41 % |
4568115971 |
3.68 % |
Base Level Counts
| Bases |
# |
% |
| Total |
50486926358 |
100% |
| Passed |
38137184771 |
75.54 % |
| Trimmed |
2016188930 |
3.99 % |
| Clipped |
1332966099 |
2.64 % |
| Overlapping |
8451882974 |
16.74 % |
| LowQuality |
548703584 |
1.09 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |