/EXTERNAL CREST/methylation/K006444_1_lane_gembs

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SAMPLE K006444_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25210657 9995816 39.65 %
NonRefCpG 587603 60409 10.28 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006444_1_lane_gembs_coverage_refCpG.png ./IMG//K006444_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006444_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006444_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006444_1_lane_gembs_quality_refcpg.png ./IMG//K006444_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006444_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 13997297 29.90 % 6555908 24.62 % 465328 46.08 % 75530 29.22 %
Intermediate (0.3-0.7) 15127416 32.31 % 7432196 27.91 % 319142 31.61 % 82261 31.82 %
Methylated (0.7-1) 17688681 37.79 % 12644642 47.48 % 225257 22.31 % 100702 38.96 %
Median Methylation 0.560 0.670 0.350 0.560