/EXTERNAL CREST/K006443_1_lane_gembs

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SAMPLE K006443_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1905930264 100.00 % 952965132 100.00 % 952965132 100.00 %
General Reads 1772376647 92.99 % 912466903 95.75 % 859909744 90.24 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 15278771 0.80 % 7432641 0.78 % 7846130 0.82 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 118274846 6.21 % 33065588 3.47 % 85209258 8.94 %
Bisulfite_reads C2T 911322281 47.82 % 469240435 49.24 % 442081846 46.39 %
Bisulfite_reads G2A 876333137 45.98 % 450659109 47.29 % 425674028 44.67 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 391677037
Average Unique 41.10 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70273224150 36.15 % 43993134977 45.26 % 26280089173 27.04 %
Base Counts Overall C 27104723704 13.94 % 23129731684 23.80 % 3974992020 4.09 %
Base Counts Overall G 27100116607 13.94 % 2189328114 2.25 % 24910788493 25.63 %
Base Counts Overall T 67998990858 34.98 % 26926269495 27.70 % 41072721363 42.25 %
Base Counts Overall N 1927831609 0.99 % 963979194 0.99 % 963852415 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9857662330307541
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 523187106



Mapping Quality

Mapping Quality Histogram
K006443_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006443_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
JKU005.Bisulfite-Seq.DNA_Methylation.JGAX00000011748.JKU005_WGBS