/EXTERNAL CREST/mapping_coverage/K006443_1_lane_gembs
BACK
SAMPLE K006443_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1693275211 |
100% |
158121274841 |
100% |
| Mapped |
1614107580 |
95.32 % |
150125344110 |
94.94 % |
| Passed |
625313065 |
36.93 % |
50257098095 |
31.78 % |
| NotPassed |
988794515 |
58.40 % |
99868246015 |
63.16 % |
| |
|
|
|
|
| LowMAPQ |
504676866 |
29.80 % |
50972363466 |
32.24 % |
| MateUnmapped |
79167631 |
4.68 % |
7995930731 |
5.06 % |
| Duplicate |
80810731 |
4.77 % |
8161883831 |
5.16 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
302180 |
0.02 % |
30520180 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
403004738 |
23.80 % |
40703478538 |
25.74 % |
| Unmapped |
79167631 |
4.68 % |
7995930731 |
5.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
63090282563 |
100% |
| Passed |
47041709509 |
74.56 % |
| Trimmed |
2512594011 |
3.98 % |
| Clipped |
1632845893 |
2.59 % |
| Overlapping |
11200338575 |
17.75 % |
| LowQuality |
702794575 |
1.11 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |