/EXTERNAL CREST/methylation/K006443_1_lane_gembs

BACK

SAMPLE K006443_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25664731 12956983 50.49 %
NonRefCpG 556292 81666 14.68 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006443_1_lane_gembs_coverage_refCpG.png ./IMG//K006443_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006443_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006443_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006443_1_lane_gembs_quality_refcpg.png ./IMG//K006443_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006443_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 13327457 27.52 % 7736613 24.16 % 428865 44.21 % 83019 27.06 %
Intermediate (0.3-0.7) 15704922 32.43 % 9172474 28.64 % 306341 31.58 % 99232 32.35 %
Methylated (0.7-1) 19387350 40.04 % 15119641 47.21 % 234755 24.20 % 124530 40.59 %
Median Methylation 0.590 0.670 0.370 0.590