/EXTERNAL CREST/K006440_1_lane_gembs/JKU002.Bisulfite-Seq.DNA_Methylation.JGAX00000011721.JKU002_WGBS

BACK

SAMPLE K006440_1_lane_gembs LANE JKU002.Bisulfite-Seq.DNA_Methylation.JGAX00000011721.JKU002_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2158260826 100.00 % 1079130413 100.00 % 1079130413 100.00 %
General Reads 1985049162 91.97 % 1033634347 95.78 % 951414815 88.16 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9362414 0.43 % 4634256 0.43 % 4728158 0.44 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 163849250 7.59 % 40861810 3.79 % 122987440 11.40 %
Bisulfite_reads C2T 1014787300 47.02 % 528540185 48.98 % 486247115 45.06 %
Bisulfite_reads G2A 979624276 45.39 % 509728418 47.24 % 469895858 43.54 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 412149464
Average Unique 38.19 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 79213872658 35.98 % 49456637656 44.93 % 29757235002 27.03 %
Base Counts Overall C 31631400814 14.37 % 25900259890 23.53 % 5731140924 5.21 %
Base Counts Overall G 30881417870 14.03 % 2780741480 2.53 % 28100676390 25.53 %
Base Counts Overall T 76215033648 34.62 % 30852423466 28.03 % 45362610182 41.21 %
Base Counts Overall N 2200879262 1.00 % 1081239634 0.98 % 1119639628 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9799597564485115
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 551896557



Mapping Quality

Mapping Quality Histogram
JKU002.Bisulfite-Seq.DNA_Methylation.JGAX00000011721.JKU002_WGBS.mapq.png



Read Length

Read Length Reads
101 1079130413
101 1079130413



Insert Size Plot

Insert Size Histogram
JKU002.Bisulfite-Seq.DNA_Methylation.JGAX00000011721.JKU002_WGBS.isize.png