/EXTERNAL CREST/methylation/K006440_1_lane_gembs

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SAMPLE K006440_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25571420 13808221 54.00 %
NonRefCpG 519965 84376 16.23 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006440_1_lane_gembs_coverage_refCpG.png ./IMG//K006440_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006440_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006440_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006440_1_lane_gembs_quality_refcpg.png ./IMG//K006440_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006440_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 12595140 25.91 % 7546048 22.45 % 391592 42.99 % 79704 25.68 %
Intermediate (0.3-0.7) 14799114 30.44 % 8978154 26.71 % 277884 30.51 % 94934 30.58 %
Methylated (0.7-1) 21220284 43.65 % 17084364 50.83 % 241336 26.50 % 135779 43.74 %
Median Methylation 0.630 0.700 0.390 0.630