/EXTERNAL CREST/mapping_coverage/K006450_1_lane_gembs
BACK
SAMPLE K006450_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2277211147 |
100% |
170230271295 |
100% |
| Mapped |
2277211147 |
100.00 % |
170230271295 |
100.00 % |
| Passed |
1275783348 |
56.02 % |
131383664827 |
77.18 % |
| NotPassed |
1001427799 |
43.98 % |
38846606468 |
22.82 % |
| |
|
|
|
|
| LowMAPQ |
366296578 |
16.09 % |
38846606468 |
22.82 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
635131221 |
27.89 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
68300185594 |
100% |
| Passed |
61470442729 |
90.00 % |
| Trimmed |
2854871546 |
4.18 % |
| Clipped |
2817206483 |
4.12 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
1157664836 |
1.69 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |