/EXTERNAL CREST/methylation/K006450_1_lane_gembs

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SAMPLE K006450_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25935801 18287515 70.51 %
NonRefCpG 334544 120140 35.91 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006450_1_lane_gembs_coverage_refCpG.png ./IMG//K006450_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006450_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006450_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006450_1_lane_gembs_quality_refcpg.png ./IMG//K006450_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006450_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9067234 17.89 % 6901121 16.96 % 170679 27.93 % 49637 15.01 %
Intermediate (0.3-0.7) 13502328 26.64 % 9816397 24.12 % 176901 28.95 % 90351 27.32 %
Methylated (0.7-1) 28121578 55.48 % 23981931 58.92 % 263511 43.12 % 190716 57.67 %
Median Methylation 0.740 0.770 0.620 0.760