/EXTERNAL McGill EMC/K006195_1_lane_gembs/McGill0112.Bisulfite-Seq.DNA_Methylation.EGAX00001425217.release_6

BACK

SAMPLE K006195_1_lane_gembs LANE McGill0112.Bisulfite-Seq.DNA_Methylation.EGAX00001425217.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 383938236 100.00 % 191969118 100.00 % 191969118 100.00 %
General Reads 375192992 97.72 % 188249237 98.06 % 186943755 97.38 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 77120 0.02 % 38708 0.02 % 38412 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8668124 2.26 % 3681173 1.92 % 4986951 2.60 %
Bisulfite_reads C2T 193394646 50.37 % 97036083 50.55 % 96358563 50.19 %
Bisulfite_reads G2A 181875466 47.37 % 91251862 47.53 % 90623604 47.21 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 153179163
Average Unique 79.79 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14924760481 38.49 % 6262632722 32.30 % 8662127759 44.68 %
Base Counts Overall C 4268053642 11.01 % 270095276 1.39 % 3997958366 20.62 %
Base Counts Overall G 4367258438 11.26 % 4078219558 21.03 % 289038880 1.49 %
Base Counts Overall T 14820507906 38.22 % 8584365276 44.27 % 6236142630 32.16 %
Base Counts Overall N 397181369 1.02 % 193568086 1.00 % 203613283 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9675109848421477
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 177715410



Mapping Quality

Mapping Quality Histogram
McGill0112.Bisulfite-Seq.DNA_Methylation.EGAX00001425217.release_6.mapq.png



Read Length

Read Length Reads
100 191969118
100 191969118



Insert Size Plot

Insert Size Histogram
McGill0112.Bisulfite-Seq.DNA_Methylation.EGAX00001425217.release_6.isize.png