/EXTERNAL McGill EMC/mapping_coverage/K006195_1_lane_gembs
BACK
SAMPLE K006195_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
373386130 |
100% |
33303074309 |
100% |
| Mapped |
369313601 |
98.91 % |
32895821409 |
98.78 % |
| Passed |
305185212 |
81.73 % |
26482982509 |
79.52 % |
| NotPassed |
64128389 |
17.17 % |
6412838900 |
19.26 % |
| |
|
|
|
|
| LowMAPQ |
58405060 |
15.64 % |
5840506000 |
17.54 % |
| MateUnmapped |
4072529 |
1.09 % |
407252900 |
1.22 % |
| Duplicate |
1819986 |
0.49 % |
181998600 |
0.55 % |
| BadOrientation |
44 |
0.00 % |
4400 |
0.00 % |
| LargeInsertSize |
3666 |
0.00 % |
366600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3899633 |
1.04 % |
389963300 |
1.17 % |
| Unmapped |
4072529 |
1.09 % |
407252900 |
1.22 % |
Base Level Counts
| Bases |
# |
% |
| Total |
30496520800 |
100% |
| Passed |
24565749469 |
80.55 % |
| Trimmed |
1365452240 |
4.48 % |
| Clipped |
41071853 |
0.13 % |
| Overlapping |
3972466438 |
13.03 % |
| LowQuality |
551780800 |
1.81 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |