/EXTERNAL McGill EMC/methylation/K006195_1_lane_gembs

BACK

SAMPLE K006195_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26174278 6538419 24.98 %
NonRefCpG 319596 49196 15.39 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006195_1_lane_gembs_coverage_refCpG.png ./IMG//K006195_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006195_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006195_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006195_1_lane_gembs_quality_refcpg.png ./IMG//K006195_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006195_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5337142 11.24 % 601894 3.68 % 113544 19.66 % 11550 7.43 %
Intermediate (0.3-0.7) 14264150 30.05 % 3392882 20.76 % 180709 31.29 % 35651 22.92 %
Methylated (0.7-1) 27864633 58.70 % 12351366 75.56 % 283356 49.06 % 108328 69.65 %
Median Methylation 0.760 0.850 0.690 0.830