/EXTERNAL McGill EMC/K006196_1_lane_gembs

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SAMPLE K006196_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 402422762 100.00 % 201211381 100.00 % 201211381 100.00 %
General Reads 390100392 96.94 % 196097336 97.46 % 194003056 96.42 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 437999 0.11 % 220593 0.11 % 217406 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11884371 2.95 % 4893452 2.43 % 6990919 3.47 %
Bisulfite_reads C2T 199531025 49.58 % 100292276 49.84 % 99238749 49.32 %
Bisulfite_reads G2A 191007366 47.46 % 96025653 47.72 % 94981713 47.20 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 159099096
Average Unique 79.07 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15905014393 39.13 % 6687722605 32.91 % 9217291788 45.36 %
Base Counts Overall C 4274213140 10.52 % 332992972 1.64 % 3941220168 19.39 %
Base Counts Overall G 4440829411 10.93 % 4093117229 20.14 % 347712182 1.71 %
Base Counts Overall T 15610481393 38.41 % 9005473024 44.31 % 6605008369 32.50 %
Base Counts Overall N 414160625 1.02 % 203043651 1.00 % 211116974 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9606025591205826
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 184246121



Mapping Quality

Mapping Quality Histogram
K006196_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006196_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0134.Bisulfite-Seq.DNA_Methylation.EGAX00001425258.release_6