/EXTERNAL McGill EMC/mapping_coverage/K006196_1_lane_gembs
BACK
SAMPLE K006196_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
374014620 |
100% |
34573362476 |
100% |
| Mapped |
368761372 |
98.60 % |
34048037676 |
98.48 % |
| Passed |
287990182 |
77.00 % |
25970918676 |
75.12 % |
| NotPassed |
80771190 |
21.60 % |
8077119000 |
23.36 % |
| |
|
|
|
|
| LowMAPQ |
55081790 |
14.73 % |
5508179000 |
15.93 % |
| MateUnmapped |
5253248 |
1.40 % |
525324800 |
1.52 % |
| Duplicate |
16152652 |
4.32 % |
1615265200 |
4.67 % |
| BadOrientation |
28 |
0.00 % |
2800 |
0.00 % |
| LargeInsertSize |
3274 |
0.00 % |
327400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
9533446 |
2.55 % |
953344600 |
2.76 % |
| Unmapped |
5253248 |
1.40 % |
525324800 |
1.52 % |
Base Level Counts
| Bases |
# |
% |
| Total |
28762962600 |
100% |
| Passed |
24114985798 |
83.84 % |
| Trimmed |
1312948011 |
4.56 % |
| Clipped |
39523216 |
0.14 % |
| Overlapping |
2752520708 |
9.57 % |
| LowQuality |
542984867 |
1.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |