/EXTERNAL McGill EMC/methylation/K006196_1_lane_gembs

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SAMPLE K006196_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25706913 5127706 19.95 %
NonRefCpG 305697 40297 13.18 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006196_1_lane_gembs_coverage_refCpG.png ./IMG//K006196_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006196_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006196_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006196_1_lane_gembs_quality_refcpg.png ./IMG//K006196_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006196_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5362388 11.57 % 457197 3.51 % 97355 17.75 % 7038 5.68 %
Intermediate (0.3-0.7) 14429496 31.12 % 2693765 20.66 % 176774 32.23 % 27191 21.96 %
Methylated (0.7-1) 26573849 57.31 % 9884528 75.83 % 274363 50.02 % 89598 72.36 %
Median Methylation 0.750 0.850 0.700 0.840