/EXTERNAL McGill EMC/K006197_1_lane_gembs

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SAMPLE K006197_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2130245932 100.00 % 1065122966 100.00 % 1065122966 100.00 %
General Reads 1858772063 87.26 % 940284661 88.28 % 918487402 86.23 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9066 0.00 % 4632 0.00 % 4434 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 271464803 12.74 % 124833673 11.72 % 146631130 13.77 %
Bisulfite_reads C2T 943576649 44.29 % 477285534 44.81 % 466291115 43.78 %
Bisulfite_reads G2A 915204480 42.96 % 463003759 43.47 % 452200721 42.46 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 699394964
Average Unique 65.66 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 107541832692 37.03 % 43194695011 29.75 % 64347137681 44.31 %
Base Counts Overall C 35193828476 12.12 % 5488723499 3.78 % 29705104977 20.46 %
Base Counts Overall G 37284110641 12.84 % 29423841085 20.26 % 7860269556 5.41 %
Base Counts Overall T 108222762685 37.26 % 66026369213 45.47 % 42196393472 29.06 %
Base Counts Overall N 2184897310 0.75 % 1080087094 0.74 % 1104810216 0.76 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.5898307813250874
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 784535449



Mapping Quality

Mapping Quality Histogram
K006197_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006197_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0483.Bisulfite-Seq.DNA_Methylation.EGAX00001425461.release_6