/EXTERNAL McGill EMC/mapping_coverage/K006197_1_lane_gembs
BACK
SAMPLE K006197_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1794460664 |
100% |
192637473979 |
100% |
| Mapped |
1759726219 |
98.06 % |
187956663324 |
97.57 % |
| Passed |
1276906392 |
71.16 % |
121980595809 |
63.32 % |
| NotPassed |
482819827 |
26.91 % |
65976067515 |
34.25 % |
| |
|
|
|
|
| LowMAPQ |
370055102 |
20.62 % |
51101807050 |
26.53 % |
| MateUnmapped |
34734445 |
1.94 % |
4680810655 |
2.43 % |
| Duplicate |
65919979 |
3.67 % |
8745287667 |
4.54 % |
| BadOrientation |
374 |
0.00 % |
51170 |
0.00 % |
| LargeInsertSize |
477426 |
0.03 % |
65945186 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
46366946 |
2.58 % |
6062976442 |
3.15 % |
| Unmapped |
34734445 |
1.94 % |
4680810655 |
2.43 % |
Base Level Counts
| Bases |
# |
% |
| Total |
169587002639 |
100% |
| Passed |
114815571923 |
67.70 % |
| Trimmed |
5077222823 |
2.99 % |
| Clipped |
672692398 |
0.40 % |
| Overlapping |
46933714432 |
27.68 % |
| LowQuality |
2087801063 |
1.23 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |