/EXTERNAL McGill EMC/methylation/K006197_1_lane_gembs

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SAMPLE K006197_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26958976 23757323 88.12 %
NonRefCpG 260734 195021 74.80 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006197_1_lane_gembs_coverage_refCpG.png ./IMG//K006197_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006197_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006197_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006197_1_lane_gembs_quality_refcpg.png ./IMG//K006197_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006197_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6950130 13.03 % 5640343 11.47 % 52677 10.68 % 28543 7.03 %
Intermediate (0.3-0.7) 12667625 23.74 % 11348480 23.08 % 129109 26.18 % 99828 24.59 %
Methylated (0.7-1) 33734611 63.23 % 32177837 65.45 % 311454 63.14 % 277584 68.38 %
Median Methylation 0.800 0.810 0.790 0.820