/EXTERNAL McGill EMC/K006199_1_lane_gembs

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SAMPLE K006199_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 364445314 100.00 % 182222657 100.00 % 182222657 100.00 %
General Reads 357591513 98.12 % 179229027 98.36 % 178362486 97.88 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 633184 0.17 % 317369 0.17 % 315815 0.17 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6220617 1.71 % 2676261 1.47 % 3544356 1.95 %
Bisulfite_reads C2T 183404269 50.32 % 91925373 50.45 % 91478896 50.20 %
Bisulfite_reads G2A 174820428 47.97 % 87621023 48.08 % 87199405 47.85 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 147837443
Average Unique 81.13 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14454918560 39.27 % 5778552368 31.40 % 8676366192 47.14 %
Base Counts Overall C 3824222476 10.39 % 158679028 0.86 % 3665543448 19.92 %
Base Counts Overall G 3725042205 10.12 % 3560388069 19.35 % 164654136 0.89 %
Base Counts Overall T 14396641420 39.11 % 8713345200 47.34 % 5683296220 30.88 %
Base Counts Overall N 408152053 1.11 % 193523692 1.05 % 214628361 1.17 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9964806389332621
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 170507334



Mapping Quality

Mapping Quality Histogram
K006199_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006199_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0179.Bisulfite-Seq.DNA_Methylation.EGAX00001425281.release_6