/EXTERNAL McGill EMC/mapping_coverage/K006199_1_lane_gembs
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SAMPLE K006199_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
354417709 |
100% |
31657758450 |
100% |
| Mapped |
351006077 |
99.04 % |
31316595250 |
98.92 % |
| Passed |
291186954 |
82.16 % |
25334682950 |
80.03 % |
| NotPassed |
59819123 |
16.88 % |
5981912300 |
18.90 % |
| |
|
|
|
|
| LowMAPQ |
49643202 |
14.01 % |
4964320200 |
15.68 % |
| MateUnmapped |
3411632 |
0.96 % |
341163200 |
1.08 % |
| Duplicate |
3181504 |
0.90 % |
318150400 |
1.00 % |
| BadOrientation |
24 |
0.00 % |
2400 |
0.00 % |
| LargeInsertSize |
2100 |
0.00 % |
210000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6992293 |
1.97 % |
699229300 |
2.21 % |
| Unmapped |
3411632 |
0.96 % |
341163200 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
29099372400 |
100% |
| Passed |
23546704094 |
80.92 % |
| Trimmed |
1274371469 |
4.38 % |
| Clipped |
48515003 |
0.17 % |
| Overlapping |
3716174447 |
12.77 % |
| LowQuality |
513607387 |
1.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |