/EXTERNAL McGill EMC/methylation/K006199_1_lane_gembs

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SAMPLE K006199_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25958447 4525801 17.43 %
NonRefCpG 307954 34274 11.13 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006199_1_lane_gembs_coverage_refCpG.png ./IMG//K006199_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006199_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006199_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006199_1_lane_gembs_quality_refcpg.png ./IMG//K006199_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006199_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6795363 14.13 % 561835 4.42 % 112063 19.87 % 6421 5.57 %
Intermediate (0.3-0.7) 15545954 32.33 % 2830079 22.25 % 188615 33.45 % 26787 23.22 %
Methylated (0.7-1) 25743441 53.54 % 9329362 73.34 % 263177 46.67 % 82176 71.22 %
Median Methylation 0.720 0.840 0.670 0.830