/EXTERNAL McGill EMC/K006201_1_lane_gembs/McGill0403.Bisulfite-Seq.DNA_Methylation.EGAX00001425354.release_6

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SAMPLE K006201_1_lane_gembs LANE McGill0403.Bisulfite-Seq.DNA_Methylation.EGAX00001425354.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2239250024 100.00 % 1119625012 100.00 % 1119625012 100.00 %
General Reads 1874293459 83.70 % 947726343 84.65 % 926567116 82.76 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7832 0.00 % 3971 0.00 % 3861 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 364948733 16.30 % 171894698 15.35 % 193054035 17.24 %
Bisulfite_reads C2T 954236358 42.61 % 482508676 43.10 % 471727682 42.13 %
Bisulfite_reads G2A 920064933 41.09 % 465221638 41.55 % 454843295 40.62 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 695993695
Average Unique 62.16 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 112660987922 36.84 % 45357010669 29.66 % 67303977253 44.01 %
Base Counts Overall C 38243906196 12.50 % 7039716068 4.60 % 31204190128 20.41 %
Base Counts Overall G 39942269306 13.06 % 31109427760 20.34 % 8832841546 5.78 %
Base Counts Overall T 112690793262 36.85 % 68284369092 44.65 % 44406424170 29.04 %
Base Counts Overall N 2306437658 0.75 % 1131673583 0.74 % 1174764075 0.77 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.38229528338610874
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 787284226



Mapping Quality

Mapping Quality Histogram
McGill0403.Bisulfite-Seq.DNA_Methylation.EGAX00001425354.release_6.mapq.png



Read Length

Read Length Reads
151 455747910
125 663877102
151 455747910
125 663877102



Insert Size Plot

Insert Size Histogram
McGill0403.Bisulfite-Seq.DNA_Methylation.EGAX00001425354.release_6.isize.png