/EXTERNAL McGill EMC/mapping_coverage/K006201_1_lane_gembs
BACK
SAMPLE K006201_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1814719951 |
100% |
196346007209 |
100% |
| Mapped |
1779839679 |
98.08 % |
191750013797 |
97.66 % |
| Passed |
1279885708 |
70.53 % |
123591711726 |
62.95 % |
| NotPassed |
499953971 |
27.55 % |
68158302071 |
34.71 % |
| |
|
|
|
|
| LowMAPQ |
381895528 |
21.04 % |
52630498552 |
26.80 % |
| MateUnmapped |
34880272 |
1.92 % |
4595993412 |
2.34 % |
| Duplicate |
61083114 |
3.37 % |
8117911862 |
4.13 % |
| BadOrientation |
386 |
0.00 % |
52930 |
0.00 % |
| LargeInsertSize |
555858 |
0.03 % |
76392894 |
0.04 % |
| |
|
|
|
|
| NotCorrectlyAligned |
56419085 |
3.11 % |
7333445833 |
3.73 % |
| Unmapped |
34880272 |
1.92 % |
4595993412 |
2.34 % |
Base Level Counts
| Bases |
# |
% |
| Total |
169475674237 |
100% |
| Passed |
117055750229 |
69.07 % |
| Trimmed |
5125402953 |
3.02 % |
| Clipped |
660343815 |
0.39 % |
| Overlapping |
45223618696 |
26.68 % |
| LowQuality |
1410558544 |
0.83 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |