/EXTERNAL McGill EMC/methylation/K006201_1_lane_gembs

BACK

SAMPLE K006201_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27072171 24065706 88.89 %
NonRefCpG 264090 199528 75.55 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006201_1_lane_gembs_coverage_refCpG.png ./IMG//K006201_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006201_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006201_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006201_1_lane_gembs_quality_refcpg.png ./IMG//K006201_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006201_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7352350 13.72 % 6273665 12.62 % 54779 10.91 % 30680 7.37 %
Intermediate (0.3-0.7) 13526605 25.24 % 12214603 24.57 % 138035 27.49 % 108562 26.09 %
Methylated (0.7-1) 32706077 61.04 % 31220464 62.81 % 309265 61.60 % 276787 66.53 %
Median Methylation 0.780 0.790 0.780 0.800