/EXTERNAL McGill EMC/K006203_1_lane_gembs/McGill0472.Bisulfite-Seq.DNA_Methylation.EGAX00001425362.release_6

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SAMPLE K006203_1_lane_gembs LANE McGill0472.Bisulfite-Seq.DNA_Methylation.EGAX00001425362.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2033764748 100.00 % 1016882374 100.00 % 1016882374 100.00 %
General Reads 1993834464 98.04 % 999253447 98.27 % 994581017 97.81 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 28750 0.00 % 14397 0.00 % 14353 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 39901534 1.96 % 17614530 1.73 % 22287004 2.19 %
Bisulfite_reads C2T 1018221765 50.07 % 510278923 50.18 % 507942842 49.95 %
Bisulfite_reads G2A 975641449 47.97 % 488988921 48.09 % 486652528 47.86 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 832365626
Average Unique 81.85 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 80392222535 39.14 % 32372998784 31.52 % 48019223751 46.75 %
Base Counts Overall C 21506527954 10.47 % 1127867028 1.10 % 20378660926 19.84 %
Base Counts Overall G 21509374224 10.47 % 20452889343 19.91 % 1056484881 1.03 %
Base Counts Overall T 79894764508 38.90 % 47711884291 46.46 % 32182880217 31.34 %
Base Counts Overall N 2107350327 1.03 % 1039480328 1.01 % 1067869999 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9895695406868775
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 947195566



Mapping Quality

Mapping Quality Histogram
McGill0472.Bisulfite-Seq.DNA_Methylation.EGAX00001425362.release_6.mapq.png



Read Length

Read Length Reads
100 1016882374
100 1016882374



Insert Size Plot

Insert Size Histogram
McGill0472.Bisulfite-Seq.DNA_Methylation.EGAX00001425362.release_6.isize.png