/EXTERNAL McGill EMC/K006204_1_lane_gembs

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SAMPLE K006204_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 228656962 100.00 % 114328481 100.00 % 114328481 100.00 %
General Reads 225263071 98.52 % 112865091 98.72 % 112397980 98.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 241386 0.11 % 120893 0.11 % 120493 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3152505 1.38 % 1342497 1.17 % 1810008 1.58 %
Bisulfite_reads C2T 115240256 50.40 % 57741292 50.50 % 57498964 50.29 %
Bisulfite_reads G2A 110264201 48.22 % 55244692 48.32 % 55019509 48.12 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 93516819
Average Unique 81.80 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 9084210159 39.34 % 3563468172 30.86 % 5520741987 47.81 %
Base Counts Overall C 2398547135 10.39 % 105451082 0.91 % 2293096053 19.86 %
Base Counts Overall G 2383731553 10.32 % 2277149236 19.72 % 106582317 0.92 %
Base Counts Overall T 8991163589 38.93 % 5485858219 47.51 % 3505305370 30.36 %
Base Counts Overall N 236700726 1.02 % 115249872 1.00 % 121450854 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9960410543411202
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 107457751



Mapping Quality

Mapping Quality Histogram
K006204_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006204_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0179.Bisulfite-Seq.DNA_Methylation.EGAX00001425279.release_6