/EXTERNAL McGill EMC/K006204_1_lane_gembs/McGill0179.Bisulfite-Seq.DNA_Methylation.EGAX00001425279.release_6

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SAMPLE K006204_1_lane_gembs LANE McGill0179.Bisulfite-Seq.DNA_Methylation.EGAX00001425279.release_6

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	228656962	100.00 %	114328481	100.00 %	114328481	100.00 %
General Reads	225263071	98.52 %	112865091	98.72 %	112397980	98.31 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	241386	0.11 %	120893	0.11 %	120493	0.11 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	3152505	1.38 %	1342497	1.17 %	1810008	1.58 %
Bisulfite_reads C2T	115240256	50.40 %	57741292	50.50 %	57498964	50.29 %
Bisulfite_reads G2A	110264201	48.22 %	55244692	48.32 %	55019509	48.12 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	93516819
Average Unique	81.80 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	9084210159	39.34 %	3563468172	30.86 %	5520741987	47.81 %
Base Counts Overall C	2398547135	10.39 %	105451082	0.91 %	2293096053	19.86 %
Base Counts Overall G	2383731553	10.32 %	2277149236	19.72 %	106582317	0.92 %
Base Counts Overall T	8991163589	38.93 %	5485858219	47.51 %	3505305370	30.36 %
Base Counts Overall N	236700726	1.02 %	115249872	1.00 %	121450854	1.05 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9960410543411202
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	107457751

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	114328481
100	114328481

Insert Size Plot

Insert Size Histogram