/EXTERNAL McGill EMC/methylation/K006204_1_lane_gembs

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SAMPLE K006204_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25387094 1697041 6.68 %
NonRefCpG 362390 10747 2.97 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006204_1_lane_gembs_coverage_refCpG.png ./IMG//K006204_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006204_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006204_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006204_1_lane_gembs_quality_refcpg.png ./IMG//K006204_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006204_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5805735 13.05 % 97993 2.11 % 151018 23.63 % 1336 3.27 %
Intermediate (0.3-0.7) 14094213 31.69 % 850416 18.32 % 209999 32.86 % 7721 18.90 %
Methylated (0.7-1) 24574098 55.25 % 3692651 79.56 % 277995 43.50 % 31798 77.83 %
Median Methylation 0.740 0.860 0.630 0.860