/EXTERNAL McGill EMC/K006205_1_lane_gembs

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SAMPLE K006205_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2060689278 100.00 % 1030344639 100.00 % 1030344639 100.00 %
General Reads 1663264057 80.71 % 837152915 81.25 % 826111142 80.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9257 0.00 % 4673 0.00 % 4584 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 397415964 19.29 % 193187051 18.75 % 204228913 19.82 %
Bisulfite_reads C2T 845291623 41.02 % 425494999 41.30 % 419796624 40.74 %
Bisulfite_reads G2A 817981691 39.69 % 411662589 39.95 % 406319102 39.44 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 608612236
Average Unique 59.07 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 104180318610 36.69 % 42351673999 29.83 % 61828644611 43.55 %
Base Counts Overall C 36216335680 12.75 % 7763349963 5.47 % 28452985717 20.04 %
Base Counts Overall G 37677006970 13.27 % 28768320777 20.26 % 8908686193 6.27 %
Base Counts Overall T 103595667439 36.48 % 62049553078 43.71 % 41546114361 29.26 %
Base Counts Overall N 2273822541 0.80 % 1038677803 0.73 % 1235144738 0.87 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.35476444005157526
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 685082156



Mapping Quality

Mapping Quality Histogram
K006205_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006205_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0401.Bisulfite-Seq.DNA_Methylation.EGAX00001425315.release_6