/EXTERNAL McGill EMC/mapping_coverage/K006205_1_lane_gembs
BACK
SAMPLE K006205_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1523057039 |
100% |
166896386586 |
100% |
| Mapped |
1498746068 |
98.40 % |
163688034081 |
98.08 % |
| Passed |
940490444 |
61.75 % |
87953813357 |
52.70 % |
| NotPassed |
558255624 |
36.65 % |
75734220724 |
45.38 % |
| |
|
|
|
|
| LowMAPQ |
369113188 |
24.24 % |
51057260244 |
30.59 % |
| MateUnmapped |
24310971 |
1.60 % |
3208352505 |
1.92 % |
| Duplicate |
143849642 |
9.44 % |
18822328598 |
11.28 % |
| BadOrientation |
536 |
0.00 % |
73760 |
0.00 % |
| LargeInsertSize |
523044 |
0.03 % |
71907904 |
0.04 % |
| |
|
|
|
|
| NotCorrectlyAligned |
44769214 |
2.94 % |
5782650218 |
3.46 % |
| Unmapped |
24310971 |
1.60 % |
3208352505 |
1.92 % |
Base Level Counts
| Bases |
# |
% |
| Total |
125166279608 |
100% |
| Passed |
83334264907 |
66.58 % |
| Trimmed |
3796514978 |
3.03 % |
| Clipped |
480365341 |
0.38 % |
| Overlapping |
36732100910 |
29.35 % |
| LowQuality |
823033472 |
0.66 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |