/EXTERNAL McGill EMC/methylation/K006205_1_lane_gembs

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SAMPLE K006205_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26685259 20440189 76.60 %
NonRefCpG 268511 173276 64.53 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006205_1_lane_gembs_coverage_refCpG.png ./IMG//K006205_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006205_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006205_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006205_1_lane_gembs_quality_refcpg.png ./IMG//K006205_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006205_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6354415 12.08 % 3804358 8.60 % 61326 12.04 % 23057 6.04 %
Intermediate (0.3-0.7) 14310908 27.21 % 11434698 25.85 % 148362 29.13 % 103988 27.26 %
Methylated (0.7-1) 31922192 60.70 % 28995799 65.55 % 299582 58.83 % 254407 66.69 %
Median Methylation 0.770 0.800 0.760 0.800