/EXTERNAL McGill EMC/K006207_1_lane_gembs/McGill0255.Bisulfite-Seq.DNA_Methylation.EGAX00001425297.release_6

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SAMPLE K006207_1_lane_gembs LANE McGill0255.Bisulfite-Seq.DNA_Methylation.EGAX00001425297.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 362312108 100.00 % 181156054 100.00 % 181156054 100.00 %
General Reads 353327775 97.52 % 177271984 97.86 % 176055791 97.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1556376 0.43 % 781366 0.43 % 775010 0.43 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7427957 2.05 % 3102704 1.71 % 4325253 2.39 %
Bisulfite_reads C2T 181228453 50.02 % 90913805 50.19 % 90314648 49.85 %
Bisulfite_reads G2A 173655698 47.93 % 87139545 48.10 % 86516153 47.76 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 142552761
Average Unique 78.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14408978730 39.38 % 5687712939 31.09 % 8721265791 47.67 %
Base Counts Overall C 3751715708 10.25 % 177975824 0.97 % 3573739884 19.53 %
Base Counts Overall G 3724017225 10.18 % 3533501316 19.31 % 190515909 1.04 %
Base Counts Overall T 14306378204 39.10 % 8706755125 47.59 % 5599623079 30.60 %
Base Counts Overall N 402433041 1.10 % 190816250 1.04 % 211616791 1.16 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9966154730194302
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 163667466



Mapping Quality

Mapping Quality Histogram
McGill0255.Bisulfite-Seq.DNA_Methylation.EGAX00001425297.release_6.mapq.png



Read Length

Read Length Reads
100 181156054
100 181156054



Insert Size Plot

Insert Size Histogram
McGill0255.Bisulfite-Seq.DNA_Methylation.EGAX00001425297.release_6.isize.png