/EXTERNAL McGill EMC/mapping_coverage/K006207_1_lane_gembs
BACK
SAMPLE K006207_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
345714022 |
100% |
30480995512 |
100% |
| Mapped |
342052450 |
98.94 % |
30114838312 |
98.80 % |
| Passed |
271344590 |
78.49 % |
23044052312 |
75.60 % |
| NotPassed |
70707860 |
20.45 % |
7070786000 |
23.20 % |
| |
|
|
|
|
| LowMAPQ |
50697494 |
14.66 % |
5069749400 |
16.63 % |
| MateUnmapped |
3661572 |
1.06 % |
366157200 |
1.20 % |
| Duplicate |
7640909 |
2.21 % |
764090900 |
2.51 % |
| BadOrientation |
24 |
0.00 % |
2400 |
0.00 % |
| LargeInsertSize |
2322 |
0.00 % |
232200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12367111 |
3.58 % |
1236711100 |
4.06 % |
| Unmapped |
3661572 |
1.06 % |
366157200 |
1.20 % |
Base Level Counts
| Bases |
# |
% |
| Total |
27113244000 |
100% |
| Passed |
21412881763 |
78.98 % |
| Trimmed |
1181044930 |
4.36 % |
| Clipped |
52460304 |
0.19 % |
| Overlapping |
4016731384 |
14.81 % |
| LowQuality |
450125619 |
1.66 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |