/EXTERNAL McGill EMC/methylation/K006207_1_lane_gembs

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SAMPLE K006207_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25806401 4321509 16.75 %
NonRefCpG 320029 32588 10.18 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006207_1_lane_gembs_coverage_refCpG.png ./IMG//K006207_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006207_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006207_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006207_1_lane_gembs_quality_refcpg.png ./IMG//K006207_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006207_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6025522 12.74 % 325648 2.88 % 113832 19.62 % 3558 3.47 %
Intermediate (0.3-0.7) 14024156 29.64 % 2136504 18.87 % 180738 31.15 % 19840 19.33 %
Methylated (0.7-1) 27258993 57.62 % 8860304 78.25 % 285584 49.23 % 79226 77.20 %
Median Methylation 0.750 0.860 0.690 0.860