/EXTERNAL McGill EMC/K006209_1_lane_gembs

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SAMPLE K006209_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2036265582 100.00 % 1018132791 100.00 % 1018132791 100.00 %
General Reads 1837776581 90.25 % 934342041 91.77 % 903434540 88.73 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5361 0.00 % 2734 0.00 % 2627 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 198483640 9.75 % 83788016 8.23 % 114695624 11.27 %
Bisulfite_reads C2T 934575863 45.90 % 475048192 46.66 % 459527671 45.13 %
Bisulfite_reads G2A 903206079 44.36 % 459296583 45.11 % 443909496 43.60 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 691518688
Average Unique 67.92 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 102857633820 36.95 % 40582547358 29.16 % 62275086462 44.74 %
Base Counts Overall C 33161858208 11.91 % 4862675633 3.49 % 28299182575 20.33 %
Base Counts Overall G 36218191711 13.01 % 28071563927 20.17 % 8146627784 5.85 %
Base Counts Overall T 104028445454 37.37 % 64632790487 46.44 % 39395654967 28.31 %
Base Counts Overall N 2095489587 0.75 % 1031231985 0.74 % 1064257602 0.76 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.5642836783801682
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 789582239



Mapping Quality

Mapping Quality Histogram
K006209_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006209_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0403.Bisulfite-Seq.DNA_Methylation.EGAX00001425346.release_6