/EXTERNAL McGill EMC/methylation/K006209_1_lane_gembs

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SAMPLE K006209_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27089863 24177694 89.25 %
NonRefCpG 270092 202414 74.94 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006209_1_lane_gembs_coverage_refCpG.png ./IMG//K006209_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006209_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006209_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006209_1_lane_gembs_quality_refcpg.png ./IMG//K006209_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006209_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5550721 10.35 % 4549052 9.14 % 38178 7.49 % 15065 3.60 %
Intermediate (0.3-0.7) 9953312 18.57 % 8821231 17.73 % 103026 20.21 % 74331 17.75 %
Methylated (0.7-1) 38108398 71.08 % 36377404 73.12 % 368660 72.31 % 329471 78.66 %
Median Methylation 0.830 0.840 0.830 0.850