/EXTERNAL McGill EMC/K006210_1_lane_gembs/McGill0483.Bisulfite-Seq.DNA_Methylation.EGAX00001425460.release_6

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SAMPLE K006210_1_lane_gembs LANE McGill0483.Bisulfite-Seq.DNA_Methylation.EGAX00001425460.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1936284554 100.00 % 968142277 100.00 % 968142277 100.00 %
General Reads 1723743890 89.02 % 869731814 89.84 % 854012076 88.21 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5239 0.00 % 2692 0.00 % 2547 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 212535425 10.98 % 98407771 10.16 % 114127654 11.79 %
Bisulfite_reads C2T 874477308 45.16 % 441185281 45.57 % 433292027 44.75 %
Bisulfite_reads G2A 849271821 43.86 % 428549225 44.27 % 420722596 43.46 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 670261866
Average Unique 69.23 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 98639884844 37.15 % 39318730423 29.61 % 59321154421 44.68 %
Base Counts Overall C 31705234305 11.94 % 4534270110 3.42 % 27170964195 20.46 %
Base Counts Overall G 33688039125 12.69 % 26924944276 20.28 % 6763094849 5.09 %
Base Counts Overall T 99529628599 37.48 % 61011913715 45.95 % 38517714884 29.01 %
Base Counts Overall N 1979396959 0.75 % 981233392 0.74 % 998163567 0.75 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.3954867369632779
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 753920636



Mapping Quality

Mapping Quality Histogram
McGill0483.Bisulfite-Seq.DNA_Methylation.EGAX00001425460.release_6.mapq.png



Read Length

Read Length Reads
151 414814039
125 553328238
151 414814039
125 553328238



Insert Size Plot

Insert Size Histogram
McGill0483.Bisulfite-Seq.DNA_Methylation.EGAX00001425460.release_6.isize.png