/EXTERNAL McGill EMC/mapping_coverage/K006210_1_lane_gembs
BACK
SAMPLE K006210_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1674461152 |
100% |
181827375592 |
100% |
| Mapped |
1647107912 |
98.37 % |
178042197090 |
97.92 % |
| Passed |
1248826849 |
74.58 % |
123330672017 |
67.83 % |
| NotPassed |
398281063 |
23.79 % |
54711525073 |
30.09 % |
| |
|
|
|
|
| LowMAPQ |
308219310 |
18.41 % |
42677865562 |
23.47 % |
| MateUnmapped |
27353240 |
1.63 % |
3785178502 |
2.08 % |
| Duplicate |
50268051 |
3.00 % |
6777597531 |
3.73 % |
| BadOrientation |
332 |
0.00 % |
45764 |
0.00 % |
| LargeInsertSize |
434810 |
0.03 % |
60629262 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
39358560 |
2.35 % |
5195386954 |
2.86 % |
| Unmapped |
27353240 |
1.63 % |
3785178502 |
2.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
166854183874 |
100% |
| Passed |
115759933693 |
69.38 % |
| Trimmed |
4986009051 |
2.99 % |
| Clipped |
628975029 |
0.38 % |
| Overlapping |
42894536828 |
25.71 % |
| LowQuality |
2584729273 |
1.55 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |