/EXTERNAL McGill EMC/methylation/K006210_1_lane_gembs

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SAMPLE K006210_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26995114 23992419 88.88 %
NonRefCpG 262355 198169 75.53 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006210_1_lane_gembs_coverage_refCpG.png ./IMG//K006210_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006210_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006210_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006210_1_lane_gembs_quality_refcpg.png ./IMG//K006210_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006210_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5679283 10.63 % 4445848 8.98 % 38159 7.70 % 15395 3.76 %
Intermediate (0.3-0.7) 10228552 19.14 % 9086525 18.36 % 100806 20.34 % 73451 17.92 %
Methylated (0.7-1) 37524705 70.23 % 35950293 72.65 % 356627 71.96 % 321039 78.32 %
Median Methylation 0.830 0.840 0.830 0.850