/EXTERNAL McGill EMC/K006211_1_lane_gembs

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SAMPLE K006211_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1318196814 100.00 % 659098407 100.00 % 659098407 100.00 %
General Reads 1287193865 97.65 % 645436517 97.93 % 641757348 97.37 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 27699 0.00 % 13891 0.00 % 13808 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 30975250 2.35 % 13647999 2.07 % 17327251 2.63 %
Bisulfite_reads C2T 658765643 49.97 % 330316700 50.12 % 328448943 49.83 %
Bisulfite_reads G2A 628455921 47.68 % 315133708 47.81 % 313322213 47.54 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 523472587
Average Unique 79.42 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 52175220521 39.19 % 21389793424 32.13 % 30785427097 46.25 %
Base Counts Overall C 13863612938 10.41 % 750304538 1.13 % 13113308400 19.70 %
Base Counts Overall G 13879820059 10.43 % 13163945347 19.77 % 715874712 1.08 %
Base Counts Overall T 51803602091 38.91 % 30591290647 45.95 % 21212311444 31.87 %
Base Counts Overall N 1415622605 1.06 % 673605151 1.01 % 742017454 1.11 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9901845886122821
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 599689370



Mapping Quality

Mapping Quality Histogram
K006211_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006211_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0474.Bisulfite-Seq.DNA_Methylation.EGAX00001425380.release_6