/EXTERNAL McGill EMC/mapping_coverage/K006211_1_lane_gembs
BACK
SAMPLE K006211_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1252398117 |
100% |
105229552500 |
100% |
| Mapped |
1241589392 |
99.14 % |
104148680000 |
98.97 % |
| Passed |
985065981 |
78.65 % |
78496338900 |
74.60 % |
| NotPassed |
256523411 |
20.48 % |
25652341100 |
24.38 % |
| |
|
|
|
|
| LowMAPQ |
170984726 |
13.65 % |
17098472600 |
16.25 % |
| MateUnmapped |
10808725 |
0.86 % |
1080872500 |
1.03 % |
| Duplicate |
35023695 |
2.80 % |
3502369500 |
3.33 % |
| BadOrientation |
124 |
0.00 % |
12400 |
0.00 % |
| LargeInsertSize |
278216 |
0.02 % |
27821600 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
50236650 |
4.01 % |
5023665000 |
4.77 % |
| Unmapped |
10808725 |
0.86 % |
1080872500 |
1.03 % |
Base Level Counts
| Bases |
# |
% |
| Total |
98499237900 |
100% |
| Passed |
73561480250 |
74.68 % |
| Trimmed |
4220885537 |
4.29 % |
| Clipped |
109949762 |
0.11 % |
| Overlapping |
19892949238 |
20.20 % |
| LowQuality |
713973113 |
0.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |