/EXTERNAL McGill EMC/methylation/K006211_1_lane_gembs

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SAMPLE K006211_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26506550 19903007 75.09 %
NonRefCpG 148047 76294 51.53 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006211_1_lane_gembs_coverage_refCpG.png ./IMG//K006211_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006211_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006211_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006211_1_lane_gembs_quality_refcpg.png ./IMG//K006211_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006211_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5756814 11.08 % 2778328 6.49 % 34194 12.42 % 8203 4.55 %
Intermediate (0.3-0.7) 11112542 21.38 % 8211905 19.17 % 69375 25.20 % 36777 20.40 %
Methylated (0.7-1) 35095864 67.54 % 31841809 74.34 % 171717 62.38 % 135337 75.05 %
Median Methylation 0.820 0.840 0.780 0.840