/EXTERNAL McGill EMC/K006212_1_lane_gembs/McGill0135.Bisulfite-Seq.DNA_Methylation.EGAX00001425259.release_6

BACK

SAMPLE K006212_1_lane_gembs LANE McGill0135.Bisulfite-Seq.DNA_Methylation.EGAX00001425259.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 373234072 100.00 % 186617036 100.00 % 186617036 100.00 %
General Reads 365516481 97.93 % 183213223 98.18 % 182303258 97.69 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 405778 0.11 % 203612 0.11 % 202166 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7311813 1.96 % 3200201 1.71 % 4111612 2.20 %
Bisulfite_reads C2T 187563745 50.25 % 94015691 50.38 % 93548054 50.13 %
Bisulfite_reads G2A 178358514 47.79 % 89401144 47.91 % 88957370 47.67 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 148946623
Average Unique 79.81 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14494151754 38.45 % 6028934543 31.99 % 8465217211 44.91 %
Base Counts Overall C 4162780826 11.04 % 298831179 1.59 % 3863949647 20.50 %
Base Counts Overall G 4285116812 11.37 % 3970985955 21.07 % 314130857 1.67 %
Base Counts Overall T 14374185947 38.13 % 8362342148 44.37 % 6011843799 31.90 %
Base Counts Overall N 380405933 1.01 % 187226811 0.99 % 193179122 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.964113551805302
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 174691020



Mapping Quality

Mapping Quality Histogram
McGill0135.Bisulfite-Seq.DNA_Methylation.EGAX00001425259.release_6.mapq.png



Read Length

Read Length Reads
100 186617036
100 186617036



Insert Size Plot

Insert Size Histogram
McGill0135.Bisulfite-Seq.DNA_Methylation.EGAX00001425259.release_6.isize.png