/EXTERNAL McGill EMC/mapping_coverage/K006212_1_lane_gembs
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SAMPLE K006212_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
363995343 |
100% |
33153766454 |
100% |
| Mapped |
360826977 |
99.13 % |
32836929854 |
99.04 % |
| Passed |
296847062 |
81.55 % |
26438938354 |
79.75 % |
| NotPassed |
63979915 |
17.58 % |
6397991500 |
19.30 % |
| |
|
|
|
|
| LowMAPQ |
58073412 |
15.95 % |
5807341200 |
17.52 % |
| MateUnmapped |
3168366 |
0.87 % |
316836600 |
0.96 % |
| Duplicate |
1528926 |
0.42 % |
152892600 |
0.46 % |
| BadOrientation |
34 |
0.00 % |
3400 |
0.00 % |
| LargeInsertSize |
3258 |
0.00 % |
325800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
4374285 |
1.20 % |
437428500 |
1.32 % |
| Unmapped |
3168366 |
0.87 % |
316836600 |
0.96 % |
Base Level Counts
| Bases |
# |
% |
| Total |
29659445200 |
100% |
| Passed |
24626091673 |
83.03 % |
| Trimmed |
1348510849 |
4.55 % |
| Clipped |
38305704 |
0.13 % |
| Overlapping |
3182201142 |
10.73 % |
| LowQuality |
464335832 |
1.57 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |