/EXTERNAL McGill EMC/methylation/K006212_1_lane_gembs

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SAMPLE K006212_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26022943 6479881 24.90 %
NonRefCpG 302077 47518 15.73 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006212_1_lane_gembs_coverage_refCpG.png ./IMG//K006212_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006212_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006212_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006212_1_lane_gembs_quality_refcpg.png ./IMG//K006212_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006212_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6010763 12.65 % 718932 4.36 % 101739 18.54 % 10801 7.18 %
Intermediate (0.3-0.7) 14618992 30.76 % 3462020 20.99 % 176126 32.10 % 34268 22.79 %
Methylated (0.7-1) 26891392 56.59 % 12314219 74.65 % 270863 49.36 % 105285 70.02 %
Median Methylation 0.750 0.850 0.690 0.830