/EXTERNAL McGill EMC/K006213_1_lane_gembs

BACK

SAMPLE K006213_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2062426418 100.00 % 1031213209 100.00 % 1031213209 100.00 %
General Reads 1729211051 83.84 % 868178219 84.19 % 861032832 83.50 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 19107 0.00 % 9625 0.00 % 9482 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 333196260 16.16 % 163025365 15.81 % 170170895 16.50 %
Bisulfite_reads C2T 870468701 42.21 % 437030093 42.38 % 433438608 42.03 %
Bisulfite_reads G2A 858761457 41.64 % 431157751 41.81 % 427603706 41.47 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 542763083
Average Unique 52.63 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 97735808627 34.51 % 39993254532 28.24 % 57742554095 40.77 %
Base Counts Overall C 42153141514 14.88 % 7863626832 5.55 % 34289514682 24.21 %
Base Counts Overall G 44594419453 15.74 % 34915714016 24.66 % 9678705437 6.83 %
Base Counts Overall T 96525077177 34.08 % 57804558839 40.82 % 38720518338 27.34 %
Base Counts Overall N 2224204853 0.79 % 1039171593 0.73 % 1185033260 0.84 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.7130673601082516
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 644828858



Mapping Quality

Mapping Quality Histogram
K006213_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006213_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0401.Bisulfite-Seq.DNA_Methylation.EGAX00001425323.release_6